Prokaryotic diversity of a Tunisian multipond solar saltern.
Identifieur interne : 000768 ( Main/Exploration ); précédent : 000767; suivant : 000769Prokaryotic diversity of a Tunisian multipond solar saltern.
Auteurs : Houda Baati [Tunisie] ; Sonda Guermazi ; Ridha Amdouni ; Neji Gharsallah ; Abdelghani Sghir ; Emna AmmarSource :
- Extremophiles : life under extreme conditions [ 1431-0651 ] ; 2008.
Descripteurs français
- KwdFr :
- ARN ribosomique 16S (génétique), Archéobactéries (classification), Archéobactéries (génétique), Bactéries (classification), Bactéries (génétique), Banque de gènes (MeSH), Clonage moléculaire (MeSH), Cyanobactéries (classification), Cyanobactéries (génétique), Eau (composition chimique), Gènes bactériens (MeSH), Gènes d'archée (MeSH), Microbiologie de l'eau (MeSH), Phylogenèse (MeSH), Tunisie (MeSH), Variation génétique (MeSH), Évolution moléculaire (MeSH).
- MESH :
- composition chimique : Archéobactéries, Bactéries, Cyanobactéries, Eau.
- génétique : ARN ribosomique 16S, Archéobactéries, Bactéries, Cyanobactéries.
- Banque de gènes, Clonage moléculaire, Gènes bactériens, Gènes d'archée, Microbiologie de l'eau, Phylogenèse, Tunisie, Variation génétique, Évolution moléculaire.
- Wicri :
- geographic : Tunisie.
English descriptors
- KwdEn :
- Archaea (classification), Archaea (genetics), Bacteria (classification), Bacteria (genetics), Cloning, Molecular (MeSH), Cyanobacteria (classification), Cyanobacteria (genetics), Evolution, Molecular (MeSH), Gene Library (MeSH), Genes, Archaeal (MeSH), Genes, Bacterial (MeSH), Genetic Variation (MeSH), Phylogeny (MeSH), RNA, Ribosomal, 16S (genetics), Tunisia (MeSH), Water (chemistry), Water Microbiology (MeSH).
- MESH :
- chemical , chemistry : Water.
- chemical , genetics : RNA, Ribosomal, 16S.
- geographic : Tunisia.
- classification : Archaea, Bacteria, Cyanobacteria.
- genetics : Archaea, Bacteria, Cyanobacteria.
- Cloning, Molecular, Evolution, Molecular, Gene Library, Genes, Archaeal, Genes, Bacterial, Genetic Variation, Phylogeny, Water Microbiology.
Abstract
16S rRNA gene clone libraries were separately constructed from three ponds with different salt concentrations, M2 (15%), TS38 (25%) and S5 (32%), located within a multipond solar saltern of Sfax. The 16S rRNA genes from 216 bacterial clones and 156 archaeal clones were sequenced and phylogenetically analyzed. 44 operational taxonomic units (OTUs) were generated for Bacteria and 67 for Archaea. Phylogenetic groups within the bacterial domain were restricted to Bacteroidetes and Proteobacteria, with the exception that one cyanobacterial OTU was found in the TS38 pond. 85.7, 26.6 and 25.0% of the bacterial OTUs from M2, TS38 and S5 ponds, respectively, are novel. All archaeal 16S rRNA gene sequences were exclusively affiliated with Euryarchaeota. 75.0, 60.0 and 66.7% of the OTUs from, respectively, M2, TS38 and S5 ponds are novel. The result showed that the Tunisian multipond solar saltern harbored novel prokaryotic diversity that has never been reported before for solar salterns. In addition, diversity measurement indicated a decrease of bacterial diversity and an increase of archaeal diversity with rising salinity gradient, which was in agreement with the previous observation for thalassohaline systems. Comparative analysis showed that prokaryotic diversity of Tunisian saltern was higher than that of other salterns previously studied.
DOI: 10.1007/s00792-008-0154-x
PubMed: 18373061
Affiliations:
Links toward previous steps (curation, corpus...)
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16S</term><term>Archéobactéries</term><term>Bactéries</term><term>Cyanobactéries</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cloning, Molecular</term><term>Evolution, Molecular</term><term>Gene Library</term><term>Genes, Archaeal</term><term>Genes, Bacterial</term><term>Genetic Variation</term><term>Phylogeny</term><term>Water Microbiology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Banque de gènes</term><term>Clonage moléculaire</term><term>Gènes bactériens</term><term>Gènes d'archée</term><term>Microbiologie de l'eau</term><term>Phylogenèse</term><term>Tunisie</term><term>Variation génétique</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Tunisie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">16S rRNA gene clone libraries were separately constructed from three ponds with different salt concentrations, M2 (15%), TS38 (25%) and S5 (32%), located within a multipond solar saltern of Sfax. The 16S rRNA genes from 216 bacterial clones and 156 archaeal clones were sequenced and phylogenetically analyzed. 44 operational taxonomic units (OTUs) were generated for Bacteria and 67 for Archaea. Phylogenetic groups within the bacterial domain were restricted to Bacteroidetes and Proteobacteria, with the exception that one cyanobacterial OTU was found in the TS38 pond. 85.7, 26.6 and 25.0% of the bacterial OTUs from M2, TS38 and S5 ponds, respectively, are novel. All archaeal 16S rRNA gene sequences were exclusively affiliated with Euryarchaeota. 75.0, 60.0 and 66.7% of the OTUs from, respectively, M2, TS38 and S5 ponds are novel. The result showed that the Tunisian multipond solar saltern harbored novel prokaryotic diversity that has never been reported before for solar salterns. In addition, diversity measurement indicated a decrease of bacterial diversity and an increase of archaeal diversity with rising salinity gradient, which was in agreement with the previous observation for thalassohaline systems. Comparative analysis showed that prokaryotic diversity of Tunisian saltern was higher than that of other salterns previously studied.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18373061</PMID><DateCompleted><Year>2008</Year><Month>11</Month><Day>13</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">1431-0651</ISSN><JournalIssue CitedMedium="Print"><Volume>12</Volume><Issue>4</Issue><PubDate><Year>2008</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Extremophiles : life under extreme conditions</Title><ISOAbbreviation>Extremophiles</ISOAbbreviation></Journal><ArticleTitle>Prokaryotic diversity of a Tunisian multipond solar saltern.</ArticleTitle><Pagination><MedlinePgn>505-18</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00792-008-0154-x</ELocationID><Abstract><AbstractText>16S rRNA gene clone libraries were separately constructed from three ponds with different salt concentrations, M2 (15%), TS38 (25%) and S5 (32%), located within a multipond solar saltern of Sfax. The 16S rRNA genes from 216 bacterial clones and 156 archaeal clones were sequenced and phylogenetically analyzed. 44 operational taxonomic units (OTUs) were generated for Bacteria and 67 for Archaea. Phylogenetic groups within the bacterial domain were restricted to Bacteroidetes and Proteobacteria, with the exception that one cyanobacterial OTU was found in the TS38 pond. 85.7, 26.6 and 25.0% of the bacterial OTUs from M2, TS38 and S5 ponds, respectively, are novel. All archaeal 16S rRNA gene sequences were exclusively affiliated with Euryarchaeota. 75.0, 60.0 and 66.7% of the OTUs from, respectively, M2, TS38 and S5 ponds are novel. The result showed that the Tunisian multipond solar saltern harbored novel prokaryotic diversity that has never been reported before for solar salterns. In addition, diversity measurement indicated a decrease of bacterial diversity and an increase of archaeal diversity with rising salinity gradient, which was in agreement with the previous observation for thalassohaline systems. Comparative analysis showed that prokaryotic diversity of Tunisian saltern was higher than that of other salterns previously studied.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Baati</LastName><ForeName>Houda</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Ecole Nationale d'Ingénieurs de Sfax, UR Etude et Gestion des Environnements Côtiers et Urbains, BP W-3038, Sfax, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guermazi</LastName><ForeName>Sonda</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Amdouni</LastName><ForeName>Ridha</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Gharsallah</LastName><ForeName>Neji</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Sghir</LastName><ForeName>Abdelghani</ForeName><Initials>A</Initials></Author><Author 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uniqKey="Guermazi S" first="Sonda" last="Guermazi">Sonda Guermazi</name><name sortKey="Sghir, Abdelghani" sort="Sghir, Abdelghani" uniqKey="Sghir A" first="Abdelghani" last="Sghir">Abdelghani Sghir</name></noCountry><country name="Tunisie"><noRegion><name sortKey="Baati, Houda" sort="Baati, Houda" uniqKey="Baati H" first="Houda" last="Baati">Houda Baati</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MaghrebDataLibMedV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000768 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000768 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= MaghrebDataLibMedV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:18373061
|texte= Prokaryotic diversity of a Tunisian multipond solar saltern.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:18373061" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a MaghrebDataLibMedV1
| This area was generated with Dilib version V0.6.38. |  |